Index of site exercises

Kinetics

Glycolysis

Cell Cycle

Biolgoical focus

Content

Folder

Abstract

Writing Mass Action rates

Generic proteins

Creating Reversible Reactions in Stella

Glycolysis related

Glycolytic reactions

Understanding models through questions.

Glycolytic reactions

Effects of DT and approximation

Glycolytic reactions

Index to exercises that model the first reactions of glycolysis.

Examples for modeling with mass action and michaelis menten

Glycolytic reactions

Modeling glucose uptake:

Contents: Concept map, table of parameter values with references, worksheet.

Use to examine affects of rate constants on rate of glucose uptake.

Glycolytic reactions

Modeling glucose conversion:

Contents: Concept map, table of parameter values with references, worksheet.

Use to examine affects of rate constants on glucose conversion in a closed system.

Glycolytic reactions

Modeling glucose uptake and conversion:

Contents: Concept map, table of parameter values with references, worksheet.

Use to examine affects of rate constants on glucose conversion in a system with an open source of glucose.

Cell Cycle related

Cell cycle

Concept mapping, assignments with Stella

Cell cycle (Goldbeter model)

Effects of Vmax values on cell cycle model behavior: becoming familar with viewing simulation results from Stella.

Cell cycle

Identifying potential model factors from experimental research papers. Written by Dr. Sible.

Cell cycle

Lab exercise: Concept mapping, learning Stella and effects of rate equations. Presented at ASCB '05. Material overview